Articles

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Callegaro A, Basso D, Bicciato S.
A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions.
Bioinformatics. (2006) 22 (21): 2658-2666.
PMID: 16951291  DOI: 10.1093/bioinformatics/btl455

Francesco Ferrari, Aldo Solari, Cristina Battaglia, Silvio Bicciato
PREDA: an R-package to identify regional variations in genomic data.
Bioinformatics. (2011) 27 (17): 2446-2447.
PMID: 21742634  DOI: 10.1093/bioinformatics/btr404

Peano C, Bicciato S, Corti G, Ferrari F, Rizzi E, Bonnal RJ, Bordoni R, Albertini A, Bernardi LR, Donadio S, De Bellis G.
Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays.
Microb Cell Fact. 2007 Nov 26; 6:37.
PMID: 18039355  DOI: 10.1186/1475-2859-6-37

Peano C, Talà A, Corti G, Pasanisi D, Durante M, Mita G, Bicciato S, De Bellis G, Alifano P.
Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain.
Microb Cell Fact. 2012 Mar 8; 11:32.
PMID: 22401291  DOI: 10.1186/1475-2859-11-32

Rossi E, Longo F, Barbagallo M, Peano C, Consolandi C, Pietrelli A, Jaillon S, Garlanda C, Landini P.
Glucose availability enhances lipopolysaccharide production and immunogenicity in the opportunistic pathogen Acinetobacter baumannii.
Future Microbiol. 2016; 11 (3): 335-49.
PMID: 26934424  DOI: 10.2217/fmb.15.153

McClure R, Balasubramanian D, Sun Y, Bobrovskyy M, Sumby P, Genco CA, Vanderpool CK, Tjaden B.
Computational analysis of bacterial RNA-Seq data.
Nucleic Acids Res. 2013 Aug; 41 (14): e140.
PMID: 23716638  DOI: 10.1093/nar/gkt444

Peano C, Chiaramonte F, Motta S, Pietrelli A, Jaillon S, Rossi E, Consolandi C, Champion OL, Michell SL, Freddi L, Falciola L, Basilico F, Garlanda C, Mauri P, De Bellis G, Landini P.
Gene and protein expression in response to different growth temperatures and oxygen availability in Burkholderia thailandensis.
PLoS One. 2014 Mar 26; 9 (3): e93009.
PMID: 24671187  DOI: 10.1371/journal.pone.0093009

Maciag A, Peano C, Pietrelli A, Egli T, De Bellis G, Landini P.
In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements.
Nucleic Acids Res. 2011 Jul; 39 (13): 5338-55.
PMID: 21398637  DOI: 10.1093/nar/gkr129

Puccio S, Grillo G, Licciulli F, Severgnini M, Liuni S, Bicciato S, De Bellis G, Ferrari F, Peano C
WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes.
Nucleic Acids Res. 2017; 45.
PMID: 28460063  DOI: 10.1093/nar/gkx329